Welcome to LLSpy’s documentation!¶
LLSpy: Lattice light-sheet post-processing utility¶
Copyright © 2017 Talley Lambert, Harvard Medical School.
LLSpy is a python library to facilitate lattice light sheet data processing. It extends the cudaDeconv binary created in the Betzig lab at Janelia Research Campus, adding features that auto-detect experimental parameters from the data folder structure and metadata (minimizing user input), auto-choose OTFs, perform image corrections and manipulations, and facilitate file handling.
- Introduction
- Graphical User Interface
- Menu Bar
- Toolbar
- Process Tab
- Preview Button
- Process Button
- Config Tab
- Use bundled cudaDeconv Binary
- cudaDeconv binary
- OTF directory and OTF auto-selection
- Generating Camera Calibration File
- Reprocess folders that have already been processed
- Save MIP Folder during “Reduce to Raw”
- Warn when quitting with unprocessed items
- Preview Type
- Watch Directory (experimental)
- Error reporting Opt Out
- Log Tab
- Progress and Status Bar
- Command Line Interface
- Developer Interface
- LLSpy Camera Corrections
- Channel Registration